Like John said, if you actually look at what the HKS VPC harness is doing, all but a few wires just go straight through. The IAT and BARO lines to the ECU have resistors tied to them, to fake a set air temperature and sealevel BARO, to keep the ECU from throwing a code. The VPC needs to see the RPM, so it taps into that ECU connection to tee off to the VPC harness. It also grabs some power from pin 24 for the ground and 102/107 for +12 volts, if I recall correctly. The only line that the harness actually cuts is the Karman Hz airflow signal, since you don't have a MAS anymore, and the VPC emulates the Karman signal.
So, the most reliable way to run the VPC is to remove that silly harness of their's, and just tap into the wires that you actually need. If you have a chip, I can lock the IAT and BARO, so you don't even need to worry about those 2 wires.
I happen to have a VPC harness right here to look at, and here is how it is connected:
PIN #102 - RED wire for +12 volts power
PIN #21 - WHITE wire for RPM
PIN #10 - GRAY wire - Karman Hz output of VPC to ECU
PIN #24 - BLACK wire for GROUND (Sensors Ground)
I think that's everything. I don't see any sign on this harness that the TPS needs to go to the VPC, but this harness is rather hacked. I also found this in the archives:
Shannon's VPC Post