Good idea on chasing the threads, although be sure to remove all the chippings from the blind hole (can be PITA) and don't forget the anti-seize lube when you install them; especially if you plan on removing them. Most people would probably recommend copper-based AS lube, but I've had good luck using the regular 'silver' permatex stuff, fwiw.
Stainless is a hard material, as mentioned and not always recommended on an application that sees excessive heat/cool cycles and esp. when you use stainless on stainless...A quality black oxide stud will be nice and if you keep it sprayed with some oil from time to time, will not rust for the most part.
If you gat "regular" studs w/o a 'key' to tighten, then take two nuts...screw one on the stud far enough down to allow a second nut to go on...tighten the first nut (bottom) against the second nut (top)...use the top one to tightent into threaded hole (bottom one to remove stud) and to remove the nuts, just hold the bottom and loosen the top nut...Be careful with torquing into aluminum though; especially cold aluminum!